andrewcboardman

rosetta_ddg

amylo-local

Code for local and hierarchical fitting of amyloid aggregation data

andrewcboardman.github.io

My website!

apta_ml

Machine learning for SELEX improvement

apta_pp

preprocessing of aptamer data

aptamers

aptamer binding part III project

droplets

EVE

Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Joint collaboration between the Marks lab and the OATML group.

gene_lists

List of gene lists for genomic analyses.

gnomad_gpcrs

gpcr-constraint-mapping

Mapping patterns of mutational constraint in GPCRs

gpcr-res-db

A script for scraping GPCRdb and associated data in a useful format for collecting residue-level information about GPCRs

gpcr-res-scores

gpcr_missense_constraint

gpcr_tree_mapper

maxent_decay

ortho-cha

ParallelFold

Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting multiple structures

polling-report-chat

pyGEMME

skRMD

A scikit-learn like implementation of the Random Matrix Discrimant classifier (see Lee et al. 2019)

zika_dengue