andrew-nowak / npg_ranger

Streaming NGS data (sam, bam, cram) - proof of concept

Geek Repo:Geek Repo

Github PK Tool:Github PK Tool

npg_ranger project

Build Status NPM dependencies

Introduction

This project is a contribution towards development of the streaming API and servers under the GA4GH initiative (GA4GH Directory API and Streaming). The project has both a server and a compatible http client.

The server conforms to as yet unpublished at the time of writing GA4GH API. It uses the http transfer encoding protocol to stream sequencing data.

Package structure

 bin - node.js scripts, server and client
 lib - application libraries
 test - tests
 docs - technical manuals
 docs/api - generated API (run "grunt doc" to generate)
 package.json - npm package definition
 Gruntfile.js - grunt runner specification

About

Streaming NGS data (sam, bam, cram) - proof of concept

License:Other


Languages

Language:JavaScript 97.4%Language:HTML 1.7%Language:Shell 0.6%Language:Perl 0.2%Language:Emacs Lisp 0.0%