Chantriolnt Andreas Kapourani's starred repositories
scvi-tools
Deep probabilistic analysis of single-cell and spatial omics data
ArtofStatistics
Code for 'The Art of Statistics'
cell2location
Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)
pyrelational
pyrelational is a python active learning library for rapidly implementing active learning pipelines from data management, model development (and Bayesian approximation), to creating novel active learning strategies.
awesome-topic-models
✨ Awesome - A curated list of amazing Topic Models (implementations, libraries, and resources)
fastTopics
Fast algorithms for fitting topic models and non-negative matrix factorizations to count data.
vae-playground
Implementation of Variational Autoencoders using Pytorch Lightning
spatial_lda
Probabilistic topic model for identifying cellular micro-environments.
NeuralDecomposition
PyTorch implementation of the paper "Neural Decomposition: Functional ANOVA with Variational Autoencoders"
FISHFactor
A probabilistic factor model for spatial transcriptomics data with subcellular resolution
RImageJROI
R package to read ImageJ ROI files