Andreas Wilm's repositories
microsoft-roadshow-hongkong-09-2019
Material for the Microsoft Hong Kong Roadshow in September 2019
automl-with-genomicsdata
Example project for running Azure AutoML on genomics data
my-dot-emacs
My .emacs file
simple-contig-joiner
>>> MERGED INTO https://github.com/andreas-wilm/vipr-tools <<<
vipr-tools
Tools for the viral amplicon workflow ViPR (version>3)
azure-docs
Open source documentation of Microsoft Azure
azure-quickstart-templates
Azure Quickstart Templates
bio-pipeline
My collection of light bioinformatics analysis pipelines for specific tasks
computerscience
Free tech resources for faculty, students, and dev advocates for use in computer science courses, workshops, and hackathons.
container-storage-setup
Service to set up storage for Docker and other container systems
cyclecloud-dingo-compute
Cyclecloud compute cluster for ICRAR's Dingo
DataScienceVM
Tools and Docs on the Azure Data Science Virtual Machine (http://aka.ms/dsvm)
dnazoo-uwa
cyclecloud template temporary
front-cover
Front Cover jekyll theme
goleft
goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary
hts-nim
nim wrapper for htslib for parsing genomics data files
kubernetes-ci-cd
https://www.linux.com/blog/learn/chapter/Intro-to-Kubernetes/2017/5/set-cicd-pipeline-kubernetes-part-1-overview
methylseq
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
nf-core-bacass
Simple bacterial assembly and annotation pipeline
nimbioseq
Nim Library for sequence (protein/nucleotide) bioinformatics
OPERA-MS
OPERA-MS - Hybrid Metagenomic Assembler
packages
List of packages for Nimble
pipelines-python-django
Sample Python Django application for Azure Pipelines docs
test-datasets
Test data to be used for automated testing with the nf-core pipelines
tools
Python package with helper tools for the nf-core community.
vcf_alnoffset
Offset VCF positions with resp to other seqs (fork of lofreq_alnoffset.py)
vipr
>>> Fork of https://github.com/nf-core/vipr <<<