andim

Andreas Tiffeau-Mayer's repositories

noisyopt

Python library for optimizing noisy functions.

Language:PythonMIT89 6 21

scipydirect

Python wrapper to the DIRECT global optimization algorithm with scipy.optimize compatible call syntax

Language:FortranMIT28 3 9

pyrepseq

Python library for immune repertoire analysis

Language:PythonMIT15 7 17

projgrad

Projected gradient optimization in python

Language:PythonMIT14 40

easyleed

Software for Low Energy Electron Diffraction I(E)-spectra analysis

Language:PythonNOASSERTION11 4 19

evolimmune

Source code accompanying the paper "Diversity of immune strategies explained by adaptation to pathogen statistics"

Language:Jupyter NotebookNOASSERTION8 3 1

paper-tcellimprint

Source code accompanying the paper "Early life imprints the hierarchy of T cell clone sizes"

Language:Jupyter NotebookMIT4 30

mise

public mise ( http://en.wikipedia.org/wiki/Mise_en_place )

Language:Shell2 30

andim.github.io

Source for personal homepage

Language:CSSNOASSERTION1 30

optimmune

Source code accompanying the paper "How a well-adapted immune system is organized"

Language:PythonNOASSERTION1 4 1

paper_coincidences

Source code accompanying the paper "Measures of epitope binding degeneracy from T cell receptor repertoires "

Language:Jupyter NotebookMIT1 20

peptidome

Self/non-self discrimination as a statistical problem

Language:Jupyter NotebookNOASSERTION1 30

pydiver

Ecological diversity analysis in python

Language:Jupyter NotebookMIT1 20

2024_inim0004

Course on Mathematical Modelling in Biomedicine at UCL

Language:Jupyter NotebookMIT020

crispr_repertoires

Source code associated with the paper 'A scaling law in CRISPR repertoire sizes arises from avoidance of autoimmunity'

Language:Jupyter NotebookMIT030

International-COVID-IFR

Age-specific mortality and immunity patterns of SARS-CoV-2 https://www.nature.com/articles/s41586-020-2918-0

Language:R020

matplotlib

matplotlib: plotting with Python

Language:PythonNOASSERTION030

OLGA

Compute generation probabilities of CDR3 amino acid and nucleotide sequences

Language:PythonGPL-3.0020

paper-bayesimmune

Source code accompanying the paper "How a well-adapting immune system remembers"

Language:Python020

paper-tcellexp

Source code accompanying the paper "Regulation of T cell expansion by antigen presentation dynamics "

Language:PythonMIT030

pomegranate

Fast, flexible and easy to use probabilistic modelling in Python.

Language:Jupyter NotebookMIT030

pyneqsys

Solve symbolically defined systems of non-linear equations numerically.

Language:PythonBSD-2-Clause030

pysnippets

Python snippets and benchmarks

Language:Jupyter NotebookMIT030

scipy

Scipy library main repository

Language:PythonNOASSERTION030

scipy.org

Scipy.org web site source code

Language:Python030

shablona

A template for small scientific python projects

Language:Jupyter NotebookMIT030

SONIA

Infer selection pressures on features of amino acid CDR3 sequences.

Language:PythonGPL-3.0020

tcr-dist

Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)

Language:PythonMIT030

transitions-paper

Source code accompanying the paper "Transitions in optimal adaptive strategies for populations in fluctuating environments"

Language:Jupyter NotebookMIT030