andeplane / atomify

Real time molecular dynamics in the browser using LAMMPS

andeplane/atomify Issues

Add OpenAI support to explain script and find which fix/compute to use
Updated 2 years ago
Editing files should not be possible while running simulation
Updated 2 years ago
Figure out why SSAO disabled does not work
Updated 2 years ago
Plotting the values of variables
Closed 2 years ago
Disable analyze menu while simulation is running
Updated 2 years ago
Add export CSV from plots
Updated 2 years ago
Add scale bar (or grid) to the visualization window
Updated 2 years ago2
Wrong axes titles
Closed 2 years ago
Atomify gets in bad state if anything communicates with wasm thread outside of sync
Updated 2 years ago
a way of changing simulation parameters from the visualization window
Updated 2 years ago1
Parallel simulations
Updated 2 years ago1
Simulation speed changing when one writes the name of a new simulation
Updated 2 years ago
A handful of suggestions
Closed 2 years ago2
Use a shortcut to change mouse mode
Updated 2 years ago
Add units to axis titles in plots
Updated 2 years ago
Orthographic visualization mode
Updated 2 years ago
Manual describing Atomify commands
Updated 2 years ago
Synchronize fixes to be able to plot ave/time or render ave/chunk
Closed 2 years ago
Add slice modifier
Updated 2 years ago
Add periodic images modifier
Updated 2 years ago
Read LAMMPS groups and support coloring of them
Updated 2 years ago
Read radius from LAMMPS if specified
Updated 2 years ago
Add support for embedded ?runSimulation=https://url/simulation.json
Updated 2 years ago
Add support for clicking atoms
Updated 2 years ago
Fix ugly lines in SSAO
Updated 2 years ago
Deposit examples are broken
Closed 2 years ago1
Fix so system is not too dark when camera is far away system
Updated 2 years ago
Switch from texture based color and radius to attribute based
Updated 2 years ago
Add support for uploading data files to view only
Updated 2 years ago
Restructure examples so each example has a simulation.json in it
Updated 2 years ago
Fix wasm path so the annoying missing / when running locally isn't an issue
Updated 2 years ago
[Security] Workflow deploy.yaml is using vulnerable action actions/checkout
Closed 2 years ago
Particle sizes sometimes bugs, probably due to resorting in LAMMPS
Closed 2 years ago
Use tag as particle identifier if given in LAMMPS
Updated 2 years ago
Add animations on camera movement
Updated 2 years ago
Create a "your simulations" page with stored files across sessions
Updated 2 years ago
Add rendering of simulation box
Updated 2 years ago
Use Jupyterlite file system to always be in sync with files
Updated 2 years ago
Replace SimulationSummary table with simpler HTML constructs as they slow down the simulation
Updated 2 years ago
Sync variables to be able to plot and color per atom
Updated 2 years ago
Fix significantly reduced performance with SimulationSummary sidebar
Updated 2 years ago
Let user configure update frequency
Closed 2 years ago
Add improved UI for mobile
Closed 2 years ago
Add SSAO
Closed 2 years ago
Let user stop simulation
Closed 2 years ago
Let user continue simulation
Updated 2 years ago
Extract compute and fix data for physical quantities
Updated 2 years ago
Remove bad examples
Updated 2 years ago