amrka

Tracking_DeepLabCut

Tracking of mice in novel object recognition

handson-ml2

A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.

Diffusion_Analysis_All_Scripts

These are the scripts I used to analyze d-MRI data acquired in oct_2017

amrka-stimulation_CA3

Analysis of stimulation experiments in the CA3 region

amrka-stimulation_perforant_pathway

Analysis scripts for perforant stimulation experiments

banana

Biomedical ANAlysis iN Arcana (Banana): biomedical analysis workflows implemented in the Arcana framework

Behavior_OF_EPM

bids_tools

scripts to organize 9.4T data and videos into BIDS format

Bru2Nii

Bruker ParaVision to NIfTI conversion

CitaAutoComplete

Auto-complete the сita receiving form on site https://sede.administracionespublicas.gob.es/ for fingerprinting.

dataset-examples

Samples for users of the Yelp Academic Dataset

Diffusion_MRI_Analysis

fmriflows

fmriflows is a consortium of many (dependent) fMRI analysis pipelines, including anatomical and functional pre-processing, univariate 1st and 2nd-level analysis, as well as multivariate pattern analysis.

heudiconv

A flexible DICOM converter for organizing brain imaging data into structured directory layouts/ modifications for bruker

john-repo

another git tutorial repo

kevin_rs-fMRI

Analysis of the resting-state data before and after photo stimulation

MGT_ds000005

replication of mixed_gambling task https://openneuro.org/datasets/ds000005

my-git-repo

git tutorial repo

NARPS_Q58J

nilearn_tutorials

Jupyter notebooks of the official nilearn tutorials

pubmed_scrape_dw-MRI_preclinical

The code used to scrape the pubmed in order to get the articles used in the review

pyforest

Lazy-import of all popular Python Data Science libraries

Python_ST7735

Python library to control an ST7735 TFT LCD display. Allows simple drawing on the display without installing a kernel module.

RABIES

fMRI preprocessing pipeline and analysis tools adapted for rodent images. Visit the full documentation at https://rabies.readthedocs.io/en/stable/

RS_fMRI_Mice

SAMRI

Small Animal Magnetic Resonance Imaging via Python.

ST7735_TFT_RPI

Library for TFT SPI LCD, ST7735 Driver, Raspberry Pi C++.

stimulation_CA3

Analysis scripts for CA stimulation using (5Hz, 10Hz, 20Hz and 40Hz)

stimulation_perforant_pathway

scripts to process stimulation experiments to the perforant pathway using 10Hz, 20 Hz and 40Hz

VBM_Mice

Analysis scripts for the 3D images acquired in October 2017