Giters
amplab
/
smash
Benchmarking toolkit for variant calling
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47
Watchers:
18
Issues:
17
Forks:
13
amplab/smash Issues
standardize output stats
Closed
10 years ago
Comments count
1
Preserve genotype information when outputting vcf files
Closed
10 years ago
Comments count
1
output vcf file discards original INFO field
Closed
10 years ago
Comments count
1
SMaSH uses too much memory
Closed
10 years ago
Comments count
1
output stats in JSON
Closed
10 years ago
Comments count
1
compare bases case-insensitively
Closed
10 years ago
Comments count
1
Variant with N ref/alt alleles causes normalization to throw an exception
Closed
10 years ago
Comments count
1
annotated VCF output from bench.py is not sorted by position
Closed
10 years ago
Comments count
1
support inversions with leading base
Closed
10 years ago
Comments count
1
SMaSH crashes on VCFs with no genotyping information at all
Closed
10 years ago
Comments count
1
error rates should be in proportion to variant category
Closed
10 years ago
Comments count
1
Option to write out "rescued" version of second input vcf
Closed
10 years ago
Comments count
1
normalized variant can be placed at same position as existing variant
Closed
10 years ago
Comments count
1
if initial base of one variant is deleted by another, SMaSH fails to rescue
Updated
10 years ago
SMaSH does not evaluate compound het variants correctly
Updated
10 years ago
Factor out unnecessary asserts
Updated
10 years ago
Add documentation source code to repository
Updated
11 years ago