Alex Morehead's repositories
awesome-equivariant-network
Paper list for equivariant neural network
lightning-hydra-template
PyTorch Lightning + Hydra. A very user-friendly template for rapid and reproducible ML experimentation with best practices. ⚡🔥⚡
geometric-rna-design
Multi-State RNA Design with Geometric Multi-Graph Neural Networks
MLForEveryone
A series of tutorials on learning Machine Learning using the Python programming language, for everyone!
amorehead-portfolYOU
My personal portfolio built using portfolYOU, a beautiful portfolio Jekyll theme that works with GitHub Pages.
awesome-expressive-gnn
A collection of papers studying/improving the expressiveness of graph neural networks (GNNs)
biopython
Official git repository for Biopython (originally converted from CVS)
chroma
A generative model for programmable protein design
conditional-flow-matching
TorchCFM: a Conditional Flow Matching library
EquiBind
EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein
esm
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
foldseek
Foldseek enables fast and sensitive comparisons of large structure sets.
geomstats
Computations and statistics on manifolds with geometric structures.
NeMo
NeMo: a toolkit for conversational AI
OmegaFold-Embeddings
OmegaFold Release Code
se3_diffusion
Implementation for SE(3) diffusion model with application to protein backbone generation
targetdiff
The official implementation of 3D Equivariant Diffusion for Target-Aware Molecule Generation and Affinity Prediction (ICLR 2023)