ammawla

PanelDoC

A targeted-sequencing CNV Calling Script written in R

epiRomics

An R package designed to integrate and visualize various levels of epigenomic information, including but not limited to: ChIP, Histone, ATAC, and RNA sequencing. epiRomics is also designed to identify enhancer and enhanceosome regions from these data.

actions

GitHub Actions for the R community

atac-seq-pipeline

ENCODE ATAC-seq pipeline

ChIPseeker

:dart: ChIP peak Annotation, Comparison and Visualization

cnv

CNV calling functions and scripts

oneliners

Useful bash one-liners for bioinformatics.

r-data-analyses

Data cleaning, tranformation, etc. in R.

targetDepth

RNA_Seq_Pipeline

Perl & Shell RNA Seq Pipeline

too-many-cells

Cluster single cells and analyze cell clade relationships with colorful visualizations.

usethis

Set up commonly used 📦 components