bioinfo-training-philippines
Bioinformatics Analysis Course for SARS-CoV-2 and Influenza
Manila, Philippines 15-19 April 2024
Mon |
Activities |
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Speaker |
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08:30 am |
Registration |
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09:00 am |
Welcome Remarks |
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Introduction of participants |
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Overview of training course |
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Clyde |
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Group photo |
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10:30 am |
Break |
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11:00 am |
Pre-course quiz |
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11:30 am |
Lecture 1 Genomic surveillance of Influenza and SARS-CoV-2 |
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Clyde |
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12:30 pm |
Lunch |
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01:30 pm |
Lecture 2 NGS data analysis |
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02:00 pm |
Lecture 3 Quality control of NGS data |
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02:30 pm |
Break |
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03:00 pm |
Hands-on Quality control with FastQC |
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05:00 pm |
Wrap up |
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Tue |
Activities |
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Speaker |
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09:00 am |
Lecture 4 Principles of genome assembly |
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Ammar |
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09:30 am |
Tutorial Influenza genome assembly with INSaFLU |
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Ammar |
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10:30 am |
Break |
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11:00 am |
Hands-on Influenza genome assembly with INSaFLU |
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Ammar |
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12:30 pm |
Lunch |
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01:30 pm |
Lecture 4a Genome assembly with Galaxy |
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Wytamma |
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02:00 pm |
Hands-on SARS-CoV-2 genome assembly with Galaxy |
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Wytamma |
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03:00 pm |
Break |
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03:30 pm |
Hands-on SARS-CoV-2 genome assembly with Galaxy |
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Wytamma |
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05:00 pm |
Wrap up |
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Wed |
Activities |
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Speaker |
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09:00 am |
Lecture 5 QC on consensus sequences generated |
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10:30 am |
Break |
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11:00 am |
Hands-on QC on consensus sequences generated |
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12:30 pm |
Lunch |
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01:00 pm |
Lecture 6 Online tools (Nextstrain, Nextclade) |
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Ammar |
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01:30 pm |
Hands-on Online tools (Nextstrain, Nextclade) |
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Ammar |
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02:30 pm |
Break |
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03:30 pm |
Lecture 7 Online tools (FluSurver, CoVsurver) |
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Clyde |
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04:00 pm |
Hands-on Online tools (FluSurver, CovSurver) |
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Clyde |
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05:00 pm |
Wrap up |
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Thu |
Activities |
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Speaker |
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09:00 am |
Lecture 8 Genetic databases (GenBank, GISAID) |
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09:30 am |
Hands-on Accessing sequences on GISAID, NCBI |
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10:00 am |
Break |
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10:30 am |
Lecture 9 Phylogenetics analysis |
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Wytamma |
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11:00 am |
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12:30 pm |
Lunch |
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01:30 pm |
Hands-on Phylogenetics analysis |
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Wytamma |
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02:30 pm |
Break |
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03:00 pm |
Hands-on Phylogenetics analysis |
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Wytamma |
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05:00 pm |
Wrap up |
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Fri |
Activities |
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Speaker |
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09:00 am |
Lecture 10 Uploading sequences to GISAID |
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Clyde |
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09:30 am |
Hands-on Uploading sequences to GISAID |
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Clyde |
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10:00 am |
Break |
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10:30 am |
Case study |
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12:30 pm |
Lunch |
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01:30 pm |
Post-course quiz |
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02:30 pm |
Open forum |
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03:30 pm |
Break |
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04:00 pm |
Course evaluation |
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04:30 pm |
Awarding of certificates |
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05:00 pm |
Closing remarks |
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