We have conducted a project to facilitate the reporting of whole genome sequencing-based results for Mycobacterium tuberculosis diagnosis, phenotyping, and epidemiologcal clustering.
This work has been published in PeerJ following peer review: https://peerj.com/articles/4218/
Citation:
@article{10.7717/peerj.4218,
title = {Evidence-based design and evaluation of a whole genome sequencing clinical report for the reference microbiology > laboratory},
author = {Crisan, Anamaria and McKee, Geoffrey and Munzner, Tamara and Gardy, Jennifer L.},
year = 2018,
month = jan,
keywords = {Human-centered design, Next generation sequencing, Report, Tuberculosis, Genome},
volume = 6,
pages = {e4218},
journal = {PeerJ},
issn = {2167-8359},
url = {https://doi.org/10.7717/peerj.4218},
doi = {10.7717/peerj.4218}
}
A template of the resulting report design can be:
Viewed: https://www.overleaf.com/latex/templates/tb-wgs-report-for-reference-lab/psmnzmcnwrwm
Downloaded: https://github.com/amcrisan/TB-WGS-MicroReport
Jennifer Gardy : jennifer.gardy@bccdc.ca
Anamaria Crisan : acrisan@cs.ubc.ca