amckay1

CellScopes.jl

A Julia package for single cell and spatial data analysis

KolmogorovArnoldNetworks.jl

KolmogorovArnoldNetworks.jl is a Julia library providing implementations of Kolmogorov-Arnold neural networks

guide-counter

A better, faster way to count guides in CRISPR screens.

bioconda_recipepod

Repository containing gitpod configuration for creating and testing bioconda recipes.

Olive.jl

pure julia notebooks

AutoAWQ

AutoAWQ implements the AWQ algorithm for 4-bit quantization with a 2x speedup during inference. Documentation:

fine-tune-mistral

Fine-tune mistral-7B on 3090s, a100s, h100s

Boltz.jl

Accelerate your ML research using pre-built Deep Learning Models with Lux

nano-rave

Nextflow pipeline designed for rapid onsite QC and variant calling of Oxford Nanopore data (following basecalling and demultiplexing with Guppy).

VimBindings.jl

Vim bindings for the Julia REPL

scimilarity

A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to represent new studies without additional training.

Mousetrap.jl

Finally, a GUI Engine made for Julia

blue-crab

crab go snap snap

battenberg

Battenberg R package for subclonal copynumber estimation

alleleCount

Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each allele [ACGT] at that location (given any filter settings)

Intervals.jl

Non-iterable ranges

LanguageModels.jl

Load nanoGPT-style transformers in Julia. Code ported from @karpathy's llama2.c

Llama2.jl

Julia package for inference and training of Llama-style language models

agc

Assembled Genomes Compressor

bcftools

This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html

vcftools

A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.

llama2.jl

llama2 in Julia

m6anet

Detection of m6A from direct RNA-Seq data

VennEuler.jl

Venn/Euler Diagrams for Julia

TIDDIT

TIDDIT - structural variant calling

gatk-sv

A structural variation pipeline for short-read sequencing

svaba

Structural variation and indel detection by local assembly

HypothesisTests.jl

Hypothesis tests for Julia

JuliaSyntax.jl

The Julia compiler frontend

BigWig.jl