amaurypm

Amaury Pupo's repositories

transcode2H265

Unattended video transcoder to H265 and ACC codecs, in MKV containers.

Language:PythonGPL-3.013 20

pseqsid

Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.

Language:RustMIT12 1 1

transcode2H264

Unattended video transcoder to H264 and ACC codecs, in MKV containers.

Language:PythonGPL-3.04 20

cmpimg

Compare a set of images and report a structural similarity index (ssim) matrix, in CSV and Mega-compatible formats.

Language:PythonGPL-3.01 20

cubediff

Substract two electrostatic maps, contained in Gaussian cube files, and generate a new electrostatic map with the difference.

Language:JuliaGPL-3.01 20

rmsdmat

Superimpose a set of protein structures and report a RSMD matrix, in CSV and Mega-compatible formats.

Language:JuliaGPL-3.01 20

splitseq

Split fasta or other sequences files into individual sequences.

Language:PythonGPL-3.01 20

cubedist

Calculate the pairwise distances (euclidean and rmsd) between a set of electrostatic maps, contained in Gaussian cube files, and report these distances in CVS and a Mega compatible formats.

Language:JuliaGPL-3.0020

noXseq

Given a set of protein sequences filters out these with non-standard residues. If not input file given it reads from the standard input and if not output file given it writes to standard output.

Language:PythonMIT020