AMath-IDM

covasim_apps

Applications of Covasim

controlling-covid19-ttq

Repository to support the publication "Controlling COVID-19 via test-trace-quarantine"

covasim_uk

Mathematical modelling of different strategies to reopen schools in the UK post COVID-19

cvsim_multicountry

COVID-19 modelling

hpvsim_england

hpvsim_ghlab_analyses

hpvsim_ghlabs_training

makerere_training

Materials for the Starsim training workshops at Makerere School of Public Health, July 2023

ptti

Population-wide Testing, Tracing and Isolation Models

scipy2022_pythonvpandemic

Talk for SciPy 2022, "Python vs the pandemic"

brazil_gamma_replacement

Repository to support the publication "Impact of SARS-CoV-2 Gamma lineage introduction and COVID-19 vaccination on the epidemiological landscape of a Brazilian city"

parestlib

Parameter estimation library

covasim_methods_paper

Scripts for generating figures for the Covasim methods paper (PLOS Computational Biology)

fastai2

Temporary home for fastai v2 while it's being developed

hpvsim_multical

hpvsim_pxv_younger

idm_amath_cova

COVID-19 Agent-based Simulator (Covasim): a model for understanding novel coronavirus epidemiology

infectious_disease_predictability

Code and data for On the Predictability of Infectious Disease Outbreaks by SV Scarpino & G Petri

mla-abc-manuscript

Code to generate figures for the machine learning approximate Bayesian computation manuscript

parallelizing-python

Tutorial on different recipes for parallelizing Python

post-omicron

scipy_proceedings

Tools used to generate the SciPy conference proceedings

simc2023

Tutorials for the SIMC 2023 workshop

ushiriki-policy-engine-library

User facing library for accessing the Ushiriki Policy Engine webservice API