Amaral Lab

Introduction-to-Python-Programming-and-Data-Science

Introduction to Python Programming and Data Science

personality-types

stopwords

NullSeq

Creates Random Coding Sequences with specified GC content and Amino Acid usage

transportation_network_evolution

Amaral_Lab_Intro_to_Data_Science

Notebooks with lessons for learning the basices of Python and Data Science

docker4all

synthetic_benchmark_topic_model

questpipe

Submit jobs to Quest MOAB scheduler integrating it in your awesome python code.

cub_benchmarking

fmug_analysis

Code to supplement Richardson et al. 2023 "Meta-Research: understudied genes are lost in a leaky pipeline between genome-wide assays and reporting of results".

iCUB

NullSeq2.0

Creates Random Coding Sequences with specified GC content, Amino Acid usage, Length, and Codon Utilization

waldo

Main branch of Waldo repo. Moved from read only bitbuckt repo.

fmug

Code to generate the Find My Understudied Genes app for Windows, iOS and macOS platforms.

gene_bot

A gene-of-the-day bot for Mastodon.

US_movies_gender_analysis

Code and data for reproducing results in PLOS One paper: Long-term patterns of gender imbalance in an industry without ability or level of interest differences

ards_decision_making

benchmarkml

FCSDecoder

pyCFI

[ABANDONED!] Python-module for inferring cell interfacial tensions from image stacks.

silhouette-extract

worksforme

Repeatable Python environments so collaborators never have to say "works for me".