om2016's repositories
dragen_pipe
scripts related to gatk variant calling pipeline
GATK_gCNV_pipeline
This repository contains scripts and resources for Copy Number Variant (CNV) analysis on and Interstitial Cystitis Cohort (n=425) using the Genome Analysis Toolkit's germline CNV (GATK-gCNV) pipeline. The GATK-gCNV pipeline could be used for other datasets.
AlgorithmsForDNASeq
Coursera Course on Algorithms for DNA Sequencing
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automationAndUpdateDataBase
Scripts for updating MySql DBase and other data management tasks
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BioinformaticsAlgorithms
Bioinformatics Algorithms Course
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sequencing_pipe
IGM Variant calling pipeline
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gatk-sv
A structural variation pipeline for short-read sequencing
BSD-3-Clause000
ProjectArabidopsis
Bulk-RNA seq data analysis(HISAT, stringtie and Ballgown)
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Ptrich_UKALLURI
Differential Gene Expression Analysis
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SG_PRANJAN11072016
Switch Grass bulk RNA-Seq data Analysis using (HISAT, Stringtie and Ballgown)
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