Alexis Simon's repositories
local_pcangsd
Local PCA with low-coverage data
quarto-pci
A quarto typst template for Peer Community In (PCI)
assembly_10x
Assembly pipeline for 10X chromium genomes of Mytilus species
academics-on-mastodon
A list of various lists consisting of academics on Mastodon
admixcov_data
Variance decomposition analysis of UK and Bohemian human ancient DNA data
demes-rs
rust tools for the demes ecosystem
Hybrid_fitness_Fisher_geometric_model
Source code to simulate Fisher's geometric model for two populations in allopatry, used afterwards to study the fitness of hybrids.
insdc-pipeline
SnakeMake pipeline to run BlobTools on public assemblies
Database_Mytilus
Database of Mytilus sp. genotyping data
ms_myt_demo
Manuscript for a demographic inference project on Mytilus.
nixpkgs
Nix Packages collection & NixOS
nubeamdedup
Removing PCR duplicates for sequencing reads.
personal_website
Personal website
popgen-notes
Population genetics notes
py-admixcov
Python functions module for the admixture covariance project
pyslim-feedstock
A conda-smithy repository for pyslim.
sgkit-feedstock
A conda-smithy repository for sgkit.
typst-packages
Packages for Typst.