Pairwise Alignment methods
Work in progress. Use own node with high gas limits for calls, or infinite gas limits for calls. Or public rpc node with such specification:
https://rpcb.genesisL1.orgABI for NeedlemanWunsch
0xa747A43Be45105155F5a0fA2c3890FF17858Ac11
[
{
"inputs": [
{
"internalType": "contract SubstitutionMatrices",
"name": "_matricesAddress",
"type": "address"
}
],
"stateMutability": "nonpayable",
"type": "constructor"
},
{
"inputs": [
{
"internalType": "string",
"name": "sequenceA",
"type": "string"
},
{
"internalType": "string",
"name": "sequenceB",
"type": "string"
},
{
"components": [
{
"internalType": "int256",
"name": "gap",
"type": "int256"
},
{
"internalType": "uint256",
"name": "limit",
"type": "uint256"
},
{
"internalType": "string",
"name": "substitutionMatrix",
"type": "string"
}
],
"internalType": "struct NeedlemanWunsch.AlignmentOptions",
"name": "alignmentOptions",
"type": "tuple"
}
],
"name": "_needlemanWunsch",
"outputs": [
{
"components": [
{
"internalType": "string",
"name": "sequenceA",
"type": "string"
},
{
"internalType": "string",
"name": "sequenceB",
"type": "string"
},
{
"components": [
{
"internalType": "string",
"name": "alignmentA",
"type": "string"
},
{
"internalType": "string",
"name": "alignmentB",
"type": "string"
}
],
"internalType": "struct NeedlemanWunsch.Alignment[]",
"name": "alignments",
"type": "tuple[]"
},
{
"internalType": "int256",
"name": "score",
"type": "int256"
},
{
"internalType": "uint256",
"name": "count",
"type": "uint256"
}
],
"internalType": "struct NeedlemanWunsch.AlignmentOutput",
"name": "alignmentOutput",
"type": "tuple"
}
],
"stateMutability": "view",
"type": "function"
},
{
"inputs": [
{
"internalType": "address",
"name": "_address",
"type": "address"
}
],
"name": "addAdmin",
"outputs": [],
"stateMutability": "nonpayable",
"type": "function"
},
{
"inputs": [
{
"internalType": "address",
"name": "_newOwner",
"type": "address"
}
],
"name": "changeOwner",
"outputs": [],
"stateMutability": "nonpayable",
"type": "function"
},
{
"inputs": [
{
"internalType": "address",
"name": "_address",
"type": "address"
}
],
"name": "isAdmin",
"outputs": [
{
"internalType": "bool",
"name": "",
"type": "bool"
}
],
"stateMutability": "view",
"type": "function"
},
{
"inputs": [
{
"internalType": "address",
"name": "_address",
"type": "address"
}
],
"name": "isOwner",
"outputs": [
{
"internalType": "bool",
"name": "",
"type": "bool"
}
],
"stateMutability": "view",
"type": "function"
},
{
"inputs": [
{
"internalType": "string",
"name": "sequenceA",
"type": "string"
},
{
"internalType": "string",
"name": "sequenceB",
"type": "string"
},
{
"internalType": "int256",
"name": "gap",
"type": "int256"
},
{
"internalType": "string",
"name": "substitutionMatrix",
"type": "string"
},
{
"internalType": "uint256",
"name": "limit",
"type": "uint256"
}
],
"name": "needlemanWunsch",
"outputs": [
{
"components": [
{
"internalType": "string",
"name": "sequenceA",
"type": "string"
},
{
"internalType": "string",
"name": "sequenceB",
"type": "string"
},
{
"components": [
{
"internalType": "string",
"name": "alignmentA",
"type": "string"
},
{
"internalType": "string",
"name": "alignmentB",
"type": "string"
}
],
"internalType": "struct NeedlemanWunsch.Alignment[]",
"name": "alignments",
"type": "tuple[]"
},
{
"internalType": "int256",
"name": "score",
"type": "int256"
},
{
"internalType": "uint256",
"name": "count",
"type": "uint256"
}
],
"internalType": "struct NeedlemanWunsch.AlignmentOutput",
"name": "alignmentOutput",
"type": "tuple"
}
],
"stateMutability": "view",
"type": "function"
},
{
"inputs": [
{
"internalType": "address",
"name": "_address",
"type": "address"
}
],
"name": "removeAdmin",
"outputs": [],
"stateMutability": "nonpayable",
"type": "function"
},
{
"inputs": [],
"name": "updateAlphabetIndices",
"outputs": [],
"stateMutability": "nonpayable",
"type": "function"
},
{
"inputs": [
{
"internalType": "uint256",
"name": "limit",
"type": "uint256"
}
],
"name": "updateDefaultLimit",
"outputs": [],
"stateMutability": "nonpayable",
"type": "function"
},
{
"inputs": [
{
"internalType": "contract SubstitutionMatrices",
"name": "_address",
"type": "address"
}
],
"name": "updateMatricesAddress",
"outputs": [],
"stateMutability": "nonpayable",
"type": "function"
}
]