Alon Oyler-Yaniv's repositories
bigstitchparallel
Bash scripts to parallelize and streamline BigStitcher
AxiovertControl
Arduino based controller for Zeiss Axiovert, developed at Krichevsky lab, BGU.
computational_biology
course material
CorneaImageAnalysis
Image analysis code to analyze ex vivo corneas
JuliesAnts
MATLAB code to analyze ants food sharing, I believe.
lap
Linear Assignment Problem solver (LAPJV/LAPMOD).
NatComms2021_SpatialStochSIR
Spatial stochastic SIR model of viral spread
Metadata
Wollman lab image metadata - Matlab/Python classes to interact with images.
minerva-author
Tool to create images and configuration files for Minerva-Story
multiview-reconstruction
Software for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data
openspim-parts
3D printable parts for OpenSPIM setups
OpticNerve
Work done for optic nerve image analysis with members of Stein eye institute
oyFRET
Code for analysis and organization of microscopy data, FRET variant
PythonFlowCytometryStartup
code and instructions on how to start analysis of flow data with python
RazorScope_Modifications
Hardware modifications for RazorScope
Results
Classes and functions to analyze and store results of microscopy experiments
SPIMSingleCellAnalysis
Single cell analysis of multicolor SPIM Data.