Johannes Alneberg's repositories
apeltzer.github.io
My personal homepage running with hugo and academic template.
august19
Homepage
cami_15_03
Cami Challenge
cookiecutter
Template for your own top-end Nextflow pipeline, customised using Cookiecutter
dotfiles
All my configuration files
eggnog_to
Scripts to transfer your eggnog annotations to ec-numbers via uniprot
gattaca-public
Lightweight metagenomic binning
logos
contains logos for nf-core
metagenomics-workshop
Metagenomics Workshop 2014-5-21 to 2014-5-23 at SciLifeLab, Stockholm
msc_thesis.scripts
The scripts used in msc_thesis project.
PolarToFunbeat
Translation of Polar Personal Trainer xml files to csv files that funbeat can consume.
public_notebooks
Ipython notebooks shared with the public
rnaseq
RNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control
scikit-learn
scikit-learn: machine learning in Python
snakemake-workflows
An experimental repo for common snakemake rules and workflows
tools
Python package with helper tools for the nf-core community.
uppmax_stats_flask
Toy flask app to investigate some specific uppmax usage stats