alneberg

apeltzer.github.io

My personal homepage running with hugo and academic template.

august19

Homepage

bb2490

Course material for BB2490

cami_15_03

Cami Challenge

charon

Database for IGN projects and samples, with RESTful interface. Built on top of Tornado and CouchDB.

cogler

Summarise and visualise COG annotations for metagenomic contigs

cookiecutter

Template for your own top-end Nextflow pipeline, customised using Cookiecutter

courses

Course homepages for some of the courses given at SciLifeLab

DESMAN

De novo Extraction of Strains from MetAgeNomes

dotfiles

All my configuration files

eggnog_to

Scripts to transfer your eggnog annotations to ec-numbers via uniprot

exoseq

Exome Sequencing analysis pipeline (Work in progress)

flask-by-example

gattaca-public

Lightweight metagenomic binning

logos

contains logos for nf-core

metagenomics-workshop

Metagenomics Workshop 2014-5-21 to 2014-5-23 at SciLifeLab, Stockholm

msc_thesis

msc_thesis.scripts

The scripts used in msc_thesis project.

OTU_connecting

PolarToFunbeat

Translation of Polar Personal Trainer xml files to csv files that funbeat can consume.

public_notebooks

Ipython notebooks shared with the public

rnaseq

RNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control

sbw2015

Swedish Bioinformatic Workshop 2015 in Stockholm

scikit-learn

scikit-learn: machine learning in Python

sillymap

A silly implementation of a short read mapper for course DD3436

snakemake-workflows

An experimental repo for common snakemake rules and workflows

subsample_fastq_challenge

tools

Python package with helper tools for the nf-core community.

uppmax_stats_flask

Toy flask app to investigate some specific uppmax usage stats

vipr

Assembly and intrahost / low-frequency variant calling for viral samples