alimuldal

phasepack

Python ports of some of Peter Kovesi's MATLAB functions for image analysis using local phase information

diptest

Python/C implementation of Hartigan & Hartigan's dip test, based on Martin Maechler's R package

PyFNND

A Python implementation of fast non-negative deconvolution

fancyflags

A Python library for defining flat or nested dictionary flags.

heartrate_monitor

hacky code to measure heartrate from calcium imaging data

matplotlib

matplotlib: plotting with Python

Pillow

The friendly PIL fork (Python Imaging Library)

PyTables

PyTables is a package for managing hierarchical datasets and designed to efficiently and easily cope with extremely large amounts of data.

scipy

Scipy main repository

tadpydoodle

Tadpydoodle is a simple GUI-based package for visual stimulus presentation, designed for neurophysiological experiments. It is written in Python for ease of scripting and extension, and uses an OpenGL graphical backend for speed. Currently only Linux is supported.

byobu

git mirror of upstream bzr at http://launchpad.net/byobu

cached-property

A decorator for caching properties in classes.

Cell_Counter

cpython

The Python programming language

dm_env

guiqwt

Efficient 2D plotting Python library based on PythonQwt

kuiper

Kuiper test and other tools from circular statistics

line_profiler

Line-by-line profiling for Python

nanoflann

nanoflann: a C++ header-only fork of FLANN, a library for KD-trees

numpy

Numpy main repository

oopsi

up-to-date code for model-based inference of spike trains from calcium imaging

pandas

Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

pew

A tool to manage multiple virtual environments written in pure python

python-bioformats

Read and write life sciences file formats

scikit-learn

scikit-learn: machine learning in Python

sciscan_tools

tools for processing Scientifica SciScan raw stacks

statsmodels

Statsmodels: statistical modeling and econometrics in Python

Theano

Optimizing GPU-meta-programming code generating array oriented optimizing math compiler in Python

tifffile

Read and write image data from and to TIFF files.

urwid

Console user interface library for Python (official repo)