Hsuan-lin Her's repositories
resistanceExp
My research project on antibiotic resistance prediction
Metadensity
Define metadensity to predict RNA binding protein function
KIR_development
Development of KIR CN tool
weighted_mutual
Domain sharing to infer protein functional correlation based on weighted mutual information
algaebrown.github.io
Personal site
circfull
a tool to detect and quantify full-length circRNA isoforms from circFL-seq
co-inheritance
Play with peri-odontal disease metagenome; Aim at a functional perspective
deep-exrna
CSE283 course project: classify cancer recurrence using exRNA
f-SHAPE-eCLIP
Generate fSHAPE/SHAPE reactivity profiles from (f)SHAPE-eCLIP reads.
FMRP_tutorial
FMRP tutorial for Jenn/Yu Liang
IPAFinder
Systematic analyses of intronic polyadenylation from standard RNAseq data
make_track
Making eCLIP coverage, CITS, CIMS tracks
merge_peaks
Pipeline for using IDR to produce a set of peaks given two replicate eCLIP peaks
Mudskipper_analysis
Analysis for tool Mudskipper, built to analyze multiplex CLIP
oligoCLIP_analysis
notebooks for oligoCLIP analysis
Porechop
adapter trimmer for Oxford Nanopore reads
QC_tools
utilities for commonly used sequencing quality control statistics
skipper
Skip the peaks and expose RNA-binding in CLIP data
Stefan_NONO
Doing eCLIP analysis for Stefan's NONO. Stefan drug some NONO, and wants to know how the drug change NONO's behaviour
tsne-popgen
Embed population genetics data using t-sne