algaebrown

resistanceExp

My research project on antibiotic resistance prediction

oligoCLIP

pipeline for oligoCLIP

Metadensity

Define metadensity to predict RNA binding protein function

ClipNet

Identify co-functioning RBPs

KIR_development

Development of KIR CN tool

weighted_mutual

Domain sharing to infer protein functional correlation based on weighted mutual information

ADAR

algaebrown.github.io

Personal site

circfull

a tool to detect and quantify full-length circRNA isoforms from circFL-seq

circSTAMP_pipe

co-inheritance

Play with peri-odontal disease metagenome; Aim at a functional perspective

cse291spr21

deep-exrna

CSE283 course project: classify cancer recurrence using exRNA

DeepRecipe

f-SHAPE-eCLIP

Generate fSHAPE/SHAPE reactivity profiles from (f)SHAPE-eCLIP reads.

FMRP_tutorial

FMRP tutorial for Jenn/Yu Liang

IPAFinder

Systematic analyses of intronic polyadenylation from standard RNAseq data

make_track

Making eCLIP coverage, CITS, CIMS tracks

merge_peaks

Pipeline for using IDR to produce a set of peaks given two replicate eCLIP peaks

Mudskipper_analysis

Analysis for tool Mudskipper, built to analyze multiplex CLIP

oligoCLIP_analysis

notebooks for oligoCLIP analysis

Porechop

adapter trimmer for Oxford Nanopore reads

prismnet

QC_tools

utilities for commonly used sequencing quality control statistics

RBP_annot

scSecretome

skipper

Skip the peaks and expose RNA-binding in CLIP data

Stefan_NONO

Doing eCLIP analysis for Stefan's NONO. Stefan drug some NONO, and wants to know how the drug change NONO's behaviour

tsne-popgen

Embed population genetics data using t-sne

tutorials