Feng Yan's repositories
ABACBS2018
Conference notes
ATAC-seq
ATAC-seq Pipeline in conjunction with Duygu Ucar & Jacques Banchereau Laboratories
atac-seq-pipeline
ENCODE ATAC-seq pipeline
Bcell_Ki67_ATAC_JEM
ATACseq analysis for JEM paper
progmarker
Finding prognostic marker
shiny_kegg
Shiny app for pathway enrichment using clusterProfiler package
CalliNGS-NF
GATK RNA-Seq Variant Calling in Nextflow
ChIP_nf
Nextflow pipeline for ChIP-seq data analysis
ChIPseeker
:dart:ChIP peak Annotation, Comparison and Visualization
DOSE
:mask: Disease Ontology Semantic and Enrichment analysis
epihet
EpiHet
IsoLamp
Identification of known and novel isoforms from targeted amplicon long-read sequencing
localWorkshop
Workshop Slides and Website for Cross-validated Classification Workshop Held on 29 June 2018 in Sydney
methclone
Automatically exported from code.google.com/p/methclone
methyl_util
Useful scripts and functions for methylation analysis
methylseq
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
MINTIE
Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
plyranges
A grammar of genomic data transformation
RNA-seq-variant-calling
Functions to call variant in RNA-Seq with Mutect2, Varscan, and Vardict
RNAsik-pipe
RNAsik - more than just a pipeline
SalmonTools
Useful tools for working with Salmon output
starter-hugo-academic
🎓 Hugo Academic Theme 创建一个学术网站. Easily create a beautiful academic résumé or educational website using Hugo, GitHub, and Netlify.
TCGAworkflow
useful scripts for TCGA data analysis
utils
utility functions for *-seq data analysis