alexvpickering

shiny

Easy interactive web applications with R

awesome-shiny-extensions

🐝 Awesome R and Python packages offering extended UI or server components for the web framework Shiny

Whose-gene-is-it-anyway

qs

Quick serialization of R objects

rhandsontable

A htmlwidgets implementation of Handsontable.js

reactR

React for R

spacexr

Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics

repo-file-sync-action

🔄 GitHub Action to keep files like Action workflows or entire directories in sync between multiple repositories.

TCR-BCR-seq-analysis

T/B cell receptor sequencing analysis notes

decoupleR

R package to infer biological activities from omics data using a collection of methods.

scatterD3

R scatter plot htmlwidget based on D3.js

vitessce

Vitessce is a visual integration tool for exploration of spatial single-cell experiments.

EventStreamGPT

Dataset and modelling infrastructure for modelling "event streams": sequences of continuous time, multivariate events with complex internal dependencies.

symphony

Efficient and precise single-cell reference atlas mapping with Symphony

tryCatchLog

R package for better error handling incl. logging with a full (!) stack trace incl. line numbers, post-mortem analysis and support for parallel processing

deepknockoffs

Approximate knockoffs and model-free variable selection.

HarviaWiFi

Wifi Control of Harvia KIP Sauna Heater

vitessceR

R API and htmlwidget for Vitessce

ui

Front-end for Cellenics

dseqr

single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.

azimuth-references

scMuscle

The Cornell Single-Cell Muscle Project (scMuscle) aims to collect, analyze and provide to the research community skeletal muscle transcriptomic data

pipeline

The Cellenics pipeline project for dependency-managed work processing.

developer-docs

All development docs are kept in here.

worker

k8s worker that executes R code for experiments.

cellenics-utils

A CLI package for managing Cellenics infrastructure and codebase.

MoeDCPLogo

Making the DCP logo moe-r.

signatureSearchData

Reference datasets used by the associated signatureSearch software package

vitessce

Vitessce is a visual integration tool for exploration of spatial single-cell experiments.

DIA-reanalysis

Reanalysis pipeline code and results