Alexander M Piper's repositories
metabarcodereviewms
Repository for manuscript "Prospects and challenges of implementing DNA metabarcoding for high-throughput insect surveillance"
primer_evaluation
Evaluating metabarcoding primers for insect pests
afdscraper
An R package for scraping data from the Australian Faunal Directory
alexpiper-website
Personal website of Alexander M Piper
carpophilus_metabarcoding
Reproducible analysis for the Carpophilus Metabarcoding manuscript
cv
CV for Alexander Piper
disentangling_metabarcoding_bias_MS
Metabarcoding bias partitioning manuscript
Drosophila_metabarcoding
Reproducible analysis for the paper: "DNA Metabarcoding Enables High-Throughput Detection of Spotted Wing Drosophila (Drosophila suzukii) Within Unsorted Trap Catches"
HemipteraMetabarcodingMS
Reproducable analyses for hemiptera metabarcoding MS
locator
deep learning prediction of geographic location from individual genome sequences
metabarcoding_workshop
Resources for the Tephritid Metabarcoding workshop conducted at AgriBio in October 2022
metabrowser
A shiny app for browsing and reporting metabarcoding data
phylloxera_ssr
Analysis of SSR markers in phylloxera
piperline
A targets based metabarcoding pipeline implemented in R
piperline_nextflow
A nextflow-based metabarcoding pipeline
shinyblast
Shiny application for local BLAST search