alexpiper

taxreturn

An R package for creating taxonomic reference databases for metabarcoding studies

utility

Useful bash one-liners for bioinformatics.

iMapPESTS

Bioinformatic workflow for analysing metabarcoding data from the iMapPESTS project

seqateurs

Tools for trimming and processing sequence data

metabarcodereviewms

Repository for manuscript "Prospects and challenges of implementing DNA metabarcoding for high-throughput insect surveillance"

primer_evaluation

Evaluating metabarcoding primers for insect pests

afdscraper

An R package for scraping data from the Australian Faunal Directory

alexpiper-website

Personal website of Alexander M Piper

alexpiper.io

carpophilus_metabarcoding

Reproducible analysis for the Carpophilus Metabarcoding manuscript

cv

CV for Alexander Piper

disentangling_metabarcoding_bias_MS

Metabarcoding bias partitioning manuscript

Drosophila_metabarcoding

Reproducible analysis for the paper: "DNA Metabarcoding Enables High-Throughput Detection of Spotted Wing Drosophila (Drosophila suzukii) Within Unsorted Trap Catches"

HemipteraMetabarcodingMS

Reproducable analyses for hemiptera metabarcoding MS

locator

deep learning prediction of geographic location from individual genome sequences

metabarcoding_workshop

Resources for the Tephritid Metabarcoding workshop conducted at AgriBio in October 2022

metabrowser

A shiny app for browsing and reporting metabarcoding data

phylloxera_ssr

Analysis of SSR markers in phylloxera

piperline

A targets based metabarcoding pipeline implemented in R

piperline_nextflow

A nextflow-based metabarcoding pipeline

Psyllid_microbiome

seqscope

Shiny app for viewing metabarcoding results

shinyblast

Shiny application for local BLAST search

tephritid_metabarcoding