James R. Rybarski, Kuang Hu, Alexis Hill, Claus O. Wilke, Ilya J. Finkelstein
This repository contains analysis scripts and processed data for the project. It is structured as follows:
data/: raw data (excludes large datafiles assembled during metagenomic analysis)final_sequences/: FASTA files, Genbank files, and CSVs for each of the CASTs described in the manuscriptsrc/: scripts for data processingoutput/: outputs such as pre-processed data that are ready for analysis, as well as final analyses used in figures