alexander's repositories
CKG
Clinical Knowledge Graph (CKG) is a platform with twofold objective: 1) build a graph database with experimental data and data imported from diverse biomedical databases 2) automate knowledge discovery making use of all the information contained in the graph
Core-Business-Vocabulary
This is the issue tracker for the maintenance of Core Business Vocabulary
hercules-challenge-git
Code related to the Git Repositories track from the Hercules challenge
hercules-challenge-publications
Code related to the Researchers and Publications track from the Hercules challenge
hercules-challenge-protocols
Code related to the Experimental Protocols track from the Hercules challenge
hercules-challenge-common
Common tools related to the Hercules challenge
hello-world
The abstract of the application is here in the description of the repository.
test1
TEST
dipper
Data Ingestion Pipeline for SciGraph
owlapi
OWL API main repository
nexus
Blue Brain Nexus - A knowledge graph for data-driven science
Metrics
This repository contains the results of the FAIR Metrics Group
semtk
Drag and drop SPARQL queries and data ingestion for virtuoso and soon other SPARQL endpoints
miro
MIRO – Minimal Information for Reporting of an Ontology
apice
apice general statistics for edu
HpoTextMining
Perform text mining for identification of HPO terms in free text from scientific publication.
Ontologies-101
BD2K Module 14
alexhuszagh.github.com
Coding blog
force11demo
simple system to publish hashed hypotheses
ro2share
This project makes it possible for users to claim and curate from the SHARE repository
ipython-notebooks
A collection of IPython notebooks covering various topics.
yaj
Pilot project for Biohackathon 2017
ODEX4all-UseCases
Workflows and data munging/wrangling used in the uses cases of ODEX4all
obo-tutorial
A tutorial on using Open Biological and Biomedical Ontologies (OBO)
rash
Research Articles in Simplified HTML (RASH) Framework includes a markup language defined as a subset of HTML+RDF for writing scientific articles, and related tools to convert it into different formats, to extract data from it, etc.
openfda
openFDA is a research project to provide open APIs, raw data downloads, documentation and examples, and a developer community for an important collection of FDA public datasets.
snorkel
A training data creation and management system focused on information extraction