Alexander Blume's repositories
academicpages.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
bash-powerline
Powerline-style Bash prompt in pure Bash script. See also https://github.com/riobard/zsh-powerline
Bioconductor_Codespaces
Testing scripts for Bioconductor codespaces
bioconductor_docker
Docker Containers for Bioconductor - NEW!
chatgpt-prompt-engineering
Jupyter code notebooks of "ChatGPT Prompt Engineering for Developers" by DeepLearning.AI and OpenAI.
cookiecutter-snakemake-analysis-pipeline
A cookiecutter template that reflects my favored structure for setting up Snakemake-based analysis pipelines.
CPC2_standalone
Official repo for the standalone package of Coding Potential Calculator (CPC) 2.
dnaMethyAge
Predict epigenetic age from DNA methylation data
enrichR
An R interface to enrichR
evil
The extensible vi layer for Emacs.
files.matthuisman.nz
Various files linked to from matthuisman.nz
flair
Full-Length Alternative Isoform analysis of RNA
igv.js
Embeddable genomic visualization component based on the Integrative Genomics Viewer
IsoformSwitchAnalyzeR
An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)
makeWGBSnake
Snakemake pipeline for WGBS analysis (private repository)
TissueEnrichmentAnalysis
This repository holds the scripts for a tissue enrichment tool, which uses a hypergeometric test, apt for C. elegans use.
tmux-continuum
Continuous saving of tmux environment. Automatic restore when tmux is started. Automatic tmux start when computer is turned on.
UpSetR
An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..