Alexander Blume's repositories
academicpages.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
bash-powerline
Powerline-style Bash prompt in pure Bash script. See also https://github.com/riobard/zsh-powerline
Bioconductor_Codespaces
Testing scripts for Bioconductor codespaces
bioconductor_docker
Docker Containers for Bioconductor - NEW!
chatgpt-prompt-engineering
Jupyter code notebooks of "ChatGPT Prompt Engineering for Developers" by DeepLearning.AI and OpenAI.
cookiecutter-snakemake-analysis-pipeline
A cookiecutter template that reflects my favored structure for setting up Snakemake-based analysis pipelines.
CPC2_standalone
Official repo for the standalone package of Coding Potential Calculator (CPC) 2.
dnaMethyAge
Predict epigenetic age from DNA methylation data
evil
The extensible vi layer for Emacs.
files.matthuisman.nz
Various files linked to from matthuisman.nz
igv.js
Embeddable genomic visualization component based on the Integrative Genomics Viewer
IsoformSwitchAnalyzeR
An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)
makeWGBSnake
Snakemake pipeline for WGBS analysis (private repository)
TissueEnrichmentAnalysis
This repository holds the scripts for a tissue enrichment tool, which uses a hypergeometric test, apt for C. elegans use.
tmux-continuum
Continuous saving of tmux environment. Automatic restore when tmux is started. Automatic tmux start when computer is turned on.