Alessandro Coppe's repositories
bio-dockers
:whale: Bio-dockers: dockerized bioinformatic tools
covid19.py
š¦ See COVID-19 data from the command line
docker-pyspark
Docker image just to play around with PySpark.
ansible-quickref
Quick reference for Ansible variables
ansible-role-pip
:snake: Ansible role for pip installation
ansible-role-swift
Ansible role to install Swift programming language in Ubuntu
compfinance
Various stuff for the Coursera's Introduction to computational finance
cosmic_snp_filter
:pill: Remove COSMIC SNP variants from a VCF file
filter_by_fathmm
:pill: Filter an annotated VCF based on FATHMM_rankscore from dbNSF
genomicpp
A bunch of C++ programs for working with bioinformatics files
from_fastq_to_fasta
:pill: A software for converting FASTQ files to FASTA ones
iSpeculator
iSpeculator
number_of_fasta_seqs
:pill: A program to count the number of sequences in a FASTA file
ProgrammingAssignment2
Repository for Programming Assignment 2 for R Programming on Coursera
testdata
Small datasets for testing purpose (FASTQ, BAM)
varscan_accessories
accessory scripts for processing varscan somatic/copynumber outputs.
vcf_annotator
:chart_with_downwards_trend: VCF annotation using SCons