Tools developed by Alexandrov Team, EMBL

pyimzML

A parser to read .imzML files with python

curatr

pySM

Reference pipeline for FDR-controlled metabolite annotation for imaging mass spectrometry

SpaceM

DeepCycle

code for DeepCycle paper

cpyMSpec

Fast high-resolution isotope pattern calculator

pyMSpec

tools for manipulating mass spectra in python

pyImagingMSpec

tools for manipulating imaging mass spectrometry data in python

ims-cpp

Tools for spatial metabolomics

ims-direct-control

IMS_quality

Scientific study on the quality of MALDI imaging mass spectrometry data.

MassFuser

predicting-APMALDI-response

Predict AP-MALDI Response using Machine Learning

sm-networks

Dataset/annotation networks

spatial-corals

Scientific study on spatial statistical analysis of Growth Anomaly lesions on coral colonies.

cpyImagingMSpec

microbial-metaspace

MRMConvert

Workflow for generating regular LC-MS data from the ones acquired in MRM mode

mzml2isa

Parser to get meta information from mzML file and parse relevant information to a ISA-Tab structure

PFG

Parallel Formula Generator

precomputed_isotope_patterns

probModel

pyims_simulate_evaluate

python module for simulating imaging mass spectrometry data and evaluating subsequent result

pysparkling

A pure Python implementation of Apache Spark's RDD and DStream interfaces.

pyTLC

tools for processing imaging of tlc plates

recalibration

wheel_builders

Helper scripts for building cross-platform CFFI-based Python packages