Alex Wenzel's repositories
ChromaSC-R
A method for testing differential gene set enrichment along pseudotime trajectories
2021ccmi-intro-to-gpnb
An introductory notebook to the GenePattern Notebook ecosystem
ccal
Computational Cancer Analysis Library :crab::gun:
ccal-noir
Clone of CCAL with calls to R removed
CellFie
An alternative approach to capture the breadth of cellular functions by performing a functional analysis of existing biological networks.
community-connectors
This repository contains open source content for Google Data Studio.
delay-report
A python script that monitors a OneBusAway feed and reports delays
deseq2-notebook
A simple GenePattern Notebook illustrating modules and programmatic file transfers to GenePattern servers
docker-seurat
Docker container for seurat on a GenePattern Notebook
expanse-su-estimator
A Python script that estimates service unit (SU) charges on SDSC Expanse
gpu-nmf-benchmark
Benchmarking various implementations of non-negative matrix factorization.
GpUnit
Testing framework for GenePattern modules
gsea-py-benchmark
Code to benchmark different GSEA algorithms
GSEA_R
Revisions to the GSEA-P R Application (Subramanian and Tamayo et al 2005)
gsr-ucsd-wage-theft
A server-less, real-time calculator for computing under-appointment wage theft at UCSD.
Kraft.jl
:slot_machine:
match
Library for match :dancing_women:
oasis
UCSD Oasis platform
pyrsche
A Dockerized, notebook-based parsing and analysis framework for auto auction data
requests
Python HTTP Requests for Humans™ ✨🍰✨
sdmts-flood-plan-maps
An index of maps for MTS flood plans.
sdtransitdelay
A twitter bot that tweets when MTS buses and trolleys are delayed. Not affiliated with MTS.
ucsd-grad-data
Repo for analysis of grad student survey data from UCSD
vcf2excel
A Python library for converting VCF files to Excel spreadsheets