Albluca / DockerCollection

A collection of Docker images to run different softwares

• Description
• Usage

Description

This repository contains multiple descriptions of different interdependent dockers:

• sysbiocurie/rBase is based on rocker/rstudioand contains all the packages needed to run rRoma and rRomaDash

• sysbiocurie/rRoma is based on sysbiocurie/rBase and contains the stable version of rRoma, rRomaDash, and RNaviCell

• sysbiocurie/rRomaDevel is based on sysbiocurie/rbase and contains the developer version of rRoma, rRomaDash, and the stable version of RNaviCell

Usage

To use the rRoma docker image, it is necessary, after installing Docker, to run the following command:

docker pull sysbiocurie/rroma

After installation, the image can be started with the command

docker run -p 8787:8787 sysbiocurie/rroma

At this point, the RStudio web interface containing rRoma will be availabe, in Unix-like systems, at the address http://localhost:8787. It is then possible to access the interface by using "rstudio" as the username and password.

On windows, it may be necessary to replace localhost with the address of the machine. If any problem is encountered see the instruction here.

After starting the interface, it is possible to write r code as in the desktop version of RStudio.