Albluca

ElPiGraph.R

An R package to construct Elastic Principal Graphs

rRoma

An r interface to perform ROMA

ElPiGraph.P

Python implementation of the Elastic Principal Graphs (ElPiGraph) method

Dhaka

rRomaDash

a shiny dashboard to interact with rRoma

distutils

A fast implementation of distance computation with RCpp

academic-kickstart

albluca.github.io

Website

BalanceOfThrones

ElPiCycle

A R package to learn and stage cell cycle using principal curve

ElPiGraph.Dash

graph_abstraction

Generate cellular maps of differentiation manifolds with complex topologies.

hugo-academic

The website designer for Hugo. Build and deploy a beautiful website in minutes :rocket:

hugo-academic-mod

Macaque

netsne

pagoda2

R package for analyzing and interactively exploring large single-cell RNA-seq datasets

PQSQ-DataApproximators

Matlab and Java implementations of data analysis methods based on piece-wise quadratic approximation error (PQSQ)

PrecisionMedicineMelanoma

pydata-book

Materials and IPython notebooks for "Python for Data Analysis" by Wes McKinney, published by O'Reilly Media

rpgraph2

single_cell_portal_core

Rails/Docker application for the Broad Institute's single cell RNA-seq data portal

singleCellTK

Interactively Analyze scRNA-Seq Data

SpatialDE

Test genes for Spatial Variation

SPRING

SPRING_dev

SPRINGeR

A package to use SPRING from R

STREAM

STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data

sysbio-curie.github.io

Sysbio Curie website

URD

URD - Reconstruction of Branching Developmental Trajectories