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Albert Cheng's repositories

AgilentOneColorTemplate

R script for processing one color agilent arrays

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albert-bioinformatics-scripts

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miso-scripts

For running and controlling miso

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R-scripts-For-Microarray-Processing

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AffyTemplate

R scripts for processing Affy arrays

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CppUtilClasses

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KmerFinder

Find enriched kmer in SELEX library (assuming there exist only one motif per sequence)

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RNASeqMappingScripts3

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TALENPWMScorer

A scorer for TALEN binding site in genome in C++ and python

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AgilentTwoColorTemplate

Normalization script for Agilent Two color Arrays

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bedSeq

A program to efficiently append sequences to bed files

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FilterReads

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geneRPKM

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GEOSubmissionTool

GEO submission tool used for processing the matrix, esp for the

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Processing

projects built using processing

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scripts_Motif_Summarize

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SplidarSplicingProcessingScript

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AlbyUnixTools

Rewritten Unix commands with more features (join, cut etc) in C++.

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burgeLabEvent-preparation-scripts

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ChromField

ChromField is a field-based binary interval file for fast processing

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ChromIntNet

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enumPAM

enum PAM

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enumTALE

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JACKIE

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JACKIE2

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JACKIEdb

test UCSC

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MacGUI_Utilities

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MISOWrapper

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verifiedCopy

Verify-as-it-copies file copying utility

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ViiA7PrismTools

Scripts for processing/renormalizing and extracting values from ViiA7 matrices for use in Prism

Language:Python000