Dr. Md. Alamin's repositories
scGNN
scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks
genomic-data-visualization-2024
Course website for Genomic Data Visualization 2024
telling_stories
Telling Stories with Data
django
The Web framework for perfectionists with deadlines.
TBtools-II
GUI/CommandLine Tool Box for biologistists to utilize NGS data.
nextflow
A DSL for data-driven computational pipelines
omicsplayground
Visual self-service analytics platform for big omics data.
pyCirclize
Circular visualization in Python (Circos Plot, Chord Diagram)
chat-gpt
ChatGPT conversation saving bookmark
SmartGPT
A nodejs implementation of AI Explained on youtube's SmartGPT prompting strategy for getting better responses from gpt4.
TrimGalore
A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data
r-source-1
Read-only mirror of R source code from https://svn.r-project.org/R/, updated hourly. See the build instructions on the wiki page.
gtex-pipeline
GTEx & TOPMed data production and analysis pipelines
cellSNP
Pileup biallelic SNPs from single-cell and bulk RNA-seq data
templates
Free Blogger Templates
SnapATAC
Analysis Pipeline for Single Cell ATAC-seq
SnapHiC
SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data
mltraining
হাতেকলমে মেশিন লার্নিং বই: 'টাইটানিক 'প্রজেক্ট স্ক্রিপ্ট: কে কে বেঁচে থাকবেন জাহাজডুবির পর? বইয়ের অনলাইন লিংক: https://rakibul-hassan.gitbook.io/mlbook-titanic/
FUMA-webapp
Source code of FUMA GWAS web application
vsn-pipelines
A repository of pipelines for single-cell data in Nextflow DSL2
pySCENIC
pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.
scDeepCluster
scDeepCluster for Single Cell RNA-seq data
alaminzju.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
NGS
Next-Gen Sequencing tools from the Horvath Lab
GIST
Guiding-Image Spatial Transcriptomics