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Alain Domissy (alaindomissy)

alaindomissy

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nf-core
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Alain Domissy's repositories

cellranger

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affero

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alaindomissy.github.io

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apps

Modular (SCI-F) apps for Singularity containers

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basespaceapp

basespaceapp

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bcellmagic

B and T cell repertoire sequencing analysis pipeline using the Immcantation framework

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bioconda-recipes

Conda recipes for the bioconda channel.

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DunedinPoAm38

R package to implement DunedinPoAm38 in Illumina EPIC and 450k array data

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eido

Validator for PEP objects

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f-scLVM

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fetchngs

Pipeline to fetch metadata and raw FastQ files from public databases

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flowStats

flowStats: algorithms for flow cytometry data analysis using BioConductor tools

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friendlyhello

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hello-world

testing container for pushing to singularity-hub

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lolcow-selfinstalled

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lonnberg_svensson2017

Expression data for Lönnberg + Svensson et al, "Single-cell RNA-seq and computational analysis using temporal mixture modelling resolves Th1/Tfh fate bifurcation in malaria," Science Immunology (2017)

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methylclock

DNA methylation-based clocks

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modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

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NGI-ChIPseq

Nextflow ChIP-seq data analysis pipeline, National Genomics Infrastructure, Science for Life Laboratory in Stockholm

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racon

Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr.214270.116

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rnaseq

RNA sequencing analysis pipeline using STAR, HISAT2 and Salmon with gene counts and quality control

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scanpy-scripts

Scripts for using scanpy

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scbatch

A containerized collection of single cell sequencing batch effects correction algorithms

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SCI-F

Standard Container Integration Format

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scrnaseq

A single-cell RNAseq pipeline for 10X genomics data

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singularityhub.github.io

redirect to main http://www.singularity-hub.org site

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singularityware.github.io

base documentation site for Singularity software

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toil

A scalable, efficient, cross-platform and easy-to-use workflow engine in pure Python

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toil-rnaseq-sc

Toil-based RNA-seq pipeline for processing single-cell data

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toil-vg

Distributed and cloud computing framework for vg

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