AlaaALatif

Deep-Learning-Fundamentals

This repository will contain all my work on the fundamentals of deep learning. These will usually involve basic implementations of deep learning methods using Python's Numpy library.

carnet

This is code from the Car-Net project. The project aim was to build a classifier that can identify the make of a car from its image using deep learning.

basic_latex

A Concise Introduction to Basic LaTeX inside Jupyter Notebooks

SELEX_Sim_v0.1

aipnd-project

Project code for AI Programming with Python ND Program

AlaaALatif.github.io

Repo for Github Web Page

bjorn

basic scripts for automated data handling of SARS-CoV-2 samples for release

bwa_pipeline

ivar

iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.

StreamHopperPublic

Public Version of our StreamHopper Repository

covid

This is a general repository containing all computational work related to the COVID-19 pandemic and the associated Sars-Cov-2 virus.

deep-learning-specialization-coursera

Deep Learning Specialization by Andrew Ng on Coursera.

deep_GMM

This should contain the source code and data files for a predictive dynamic stochastic process model. It relies on feature representation of output using GMMs, and a deep network for predicting GMM parameters of unseen inputs.

fastai

The fast.ai deep learning library, lessons, and tutorials

fsdl-text-recognizer-project

Full Stack Deep Learning Bootcamp Project (Public)

Lasagne

Lightweight library to build and train neural networks in Theano

MPBindv3

msds_spark_project

Spark team project using WESAD data for Stress Detection

nblite

Open and Run Notebooks on the Browser, powered by PyScript [mirror from https://gitlab.com/eduardobonet/nblite]

neuralAttention_for_RTE

NLP-Project

RTE using LSTMs. Project For COL772: Natural Language Processing

rcnn

Recurrent & convolutional neural network modules

reasoning_attention

Unofficial implementation algorithms of attention models on SNLI dataset

sc_rna_seq

A repository containing usable code for processing and analysis of single-cell RNAseq data

scikit-learn

scikit-learn: machine learning in Python

selexim

A current working version of selexim - a software tool for simulating selex experiments.

SELEXim_v0.2

Numerical simulation of SELEX. In this updated version features are added to allow user to specify parameters through settings files. The user is also allowed to automatically post-process output results. Additionally, several bug fixes were performed.

Simulations

tcrnet

A software toolkit for processing and analyzing T-Cell Receptor (TCR) data.

virus-ancestry

A solution to the coding assignment for Andersen's lab.