Aki Nishimura's repositories
discontinuous-hmc
"Discontinuous Hamiltonian Monte Carlo for sampling discrete parameters" by Akihiko Nishimura, David Dunson, Jianfeng Lu
hmc-lecture
Lecture slides on Hamiltonian Monte Carlo
bayes-advanced-intro
Course materials for "Advanced introduction to Bayesian statistics"
mcmc-diagnostics
Implements methods for assessing convergence and quantifying effective sample sizes of a Markov chain. Similar to R packcage CODA.
horseshoe-scale-sampler
Efficient rejection sampler for updating the local scale parameter in Gibbs sampling horseshoe posteriors.
performant-statistical-computing
Course webpage for Performant Statistical Computing and Algoware Development (https://aki-nishimura.github.io/performant-statistical-computing)
anticoagulant-study-cohorts
Cohort definitions for the blood anti-coagulant study in Nishimura and Suchard (2022)
stats-comp-algo-software-2023
Course webpage for Biostat 140.778: Statistical Computing, Algorithm, and Software Development
aki-nishimura.github.io
Personal website
beast-mcmc
Bayesian Evolutionary Analysis Sampling Trees
CohortMethod
An R package for performing new-user cohort studies in an observational database in the OMOP Common Data Model.
cython_random
Cython library for random number generation
j-ISBA.github.io
j-ISBA website
minimal-mistakes
:triangular_ruler: A flexible two-column Jekyll theme perfect for building personal sites, blogs, and portfolios.
passport-size-photo-embedder
A bash script to embed a passport sized image file into a 4 x 6 inches canvas for printing.
PatientLevelPrediction
An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.
ShinyDeploy
Shiny apps in this repository will be automatically deployed to the OHDSI Shiny server.