AkhilP's repositories
DITTO
Variant Deleteriousness prediction tool using AI
Heritability_WGS
This repository contains the code used for estimating heritability from WGS data
Nirvana
The nimble & robust variant annotator
OlinkRPackage_v1
Olink R package: A collection of functions to facilitate analysis of proteomic data from Olink. The goal of this package is to help users extract biological insights from proteomic data run on the Olink platform.
Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
gnomad-browser
Explore gnomAD datasets on the web
ST.Jude_Assignments_v1
Assignment_Repository
rx
a minimal reactive framework that borrows general ideas from React and Vue-related libraries
gcp-for-bioinformatics
GCP for Bioinformatics Researchers
ST.Jude_Assignments
Assignments regarding STJude
SAIGEgds
Scalable Implementation of generalized mixed models using GDS files in Phenome-Wide Association Studies
StrVCTVRE
StrVCTVRE, a structural variant classifier for exonic deletions and duplications
rfmix
RFMIX - Local Ancestry and Admixture Inference Version 2
pheweb
A tool to build a website to browse hundreds or thousands of GWAS.
PGS_Catalog
An open database of polygenic scores and relevant metadata needed to apply and evaluate them correctly.
ukbb_pan_ancestry
Analyses conducting GWAS across the UKBB diverse superpopulations
glgc_biology_paper
Scripts used for the manuscript "Implicating genes, pleiotropy and sexual dimorphism at blood lipid loci through multi-ancestry meta-analysis"
ColocQuiaL
Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.
cheatsheets
RStudio Cheat Sheets
team-leaders-2022
A repository to share resources and a readiness checklist with team leaders.
HARE
Harmonizing genetic ancestry and self-identified race/ethnicity
robustbase
:exclamation: This is a read-only mirror of the CRAN R package repository. robustbase — Basic Robust Statistics. Homepage: https://robustbase.R-forge.R-project.org/ Report bugs for this package: https://R-forge.R-project.org/tracker/?atid=302&group_id=59
HGDP_1000G_Merge
Merging the HGDP and 1000 Genomes reference samples
PEACOK
Phenome Exome Association and Correlation Of Key phenotypes
AD_finemap
Code supporting analyses in paper on fine-mapping AD loci