akhanf / postproc-smk

WIP - Simple Post-BIDS processing pipeline with snakemake

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postproc-smk

WIP workflow to automate running bids apps (e.g. hippunfold, snakedwi) with different options (variants) or versions.

Apps use $SLURM_TMPDIR as temporary output, copying results afterwards.

Set inputs, options, app versions etc in config.

Snakedwi is not fully integrated yet (e.g. you need to git clone snakedwi into snakedwi_src currently)..

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WIP - Simple Post-BIDS processing pipeline with snakemake


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