akdel / OptiDiff

OptiDiff - Optical-map structural variation detection tool

Requirements:

Depends on OptiScan

Installation

git clone https://gitlab.com/akdel/optidiff.git
cd optidiff
pip install .

Test with toy data

OptiDiff data/genomes/yeast.cmap data/yeast10mb.fasta.bnx data/SVs_del/3101719-3137274-del.fasta.bnx,data/SVs_del/3539615-3543574-del.fasta.bnx