Akanksha Sachan's repositories
3D_chromatin_hubs
clustering of 3D genomic data to identify regulatory hubs
Language:Jupyter Notebook000
ALLCools
Toolkit for single-cell DNA methylation analysis.
Language:PythonMIT000
borzoi-pytorch
The Borzoi model from Calico, but ported to Pytorch
Language:Jupyter NotebookApache-2.0000
DL_tutorials
PyTorch tutorials.
Language:PythonBSD-3-Clause000
dnaMethylHiC
Code and data sharing of Liu et al. 2023 manuscript
Language:Jupyter NotebookMIT000
enformer-pytorch
Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch
Language:PythonMIT000
Language:PythonMIT000
masala
Genomic hubs analysis using GNNs
Language:Jupyter Notebook000
juicer
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
MIT000
Language:C++000