Giters
aidenlab
/
straw
Extract data quickly from Juicebox via straw
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Stargazers:
61
Watchers:
11
Issues:
66
Forks:
36
aidenlab/straw Issues
Error finding block data
Updated
2 months ago
Comments count
4
Had to add an include statement in the straw.cpp file
Updated
4 months ago
can't install hic-straw on win11 python3.9
Updated
5 months ago
Comments count
5
pip install command not listed in README
Updated
5 months ago
Comments count
5
error: File doesn't have the given chr_chr map.
Updated
7 months ago
Segmentation fault with plot_hic_map
Updated
7 months ago
想知道具体参数的上下限,getRecordsAsMatrix和getRecords分别得到什么信息?
Updated
8 months ago
can't install hic-straw on win11 python3.9
Closed
a year ago
Could not install on windows.
Updated
a year ago
Comments count
3
Error installing in Pycharm
Updated
a year ago
Comments count
3
Can't install hic-straw with pip in conda
Closed
2 years ago
Comments count
6
Installation on Linux not working?
Updated
a year ago
Comments count
3
Segmentation fault when calling mzd.getRecordsAsMatrix
Closed
a year ago
Comments count
4
straw binaries for linux is missing
Updated
a year ago
plot heatmap from the raw hic file(get from the juicer)
Updated
a year ago
Comments count
3
What is 'NaN' in the third column in retreived txt files
Updated
2 years ago
Comments count
18
Python: when c2 <= c1 output is not flipped back
Updated
2 years ago
Configure query
Closed
2 years ago
Comments count
3
Update readme for import straw
Updated
2 years ago
Q: Fastest way to determine if mzd has no records
Closed
2 years ago
Comments count
1
Is there a way to extract the inter-balanced matrix or the genome-wide matrix?
Updated
2 years ago
Comments count
3
strawR update
Updated
2 years ago
Comments count
3
straw and strawr don't dump same values
Updated
2 years ago
Comments count
1
Straw takes too much time to run locally in comparison to Collab notebook.
Closed
3 years ago
Comments count
3
In case of detected errors, straw prints them and returns instead of raising an Exception
Closed
3 years ago
Comments count
1
Declare curl in SystemRequirements in the R package
Closed
3 years ago
Comments count
4
is the strawc package on bioconda official?
Closed
3 years ago
Comments count
5
not enough arguments
Updated
3 years ago
Comments count
5
Long running then return an empty list (Python version)
Closed
3 years ago
Comments count
2
Incompatible function signature introduced by a recent commit (0e9cfa)
Closed
3 years ago
Comments count
6
__init__() takes from 2 to 3 positional arguments but 7 were given
Updated
3 years ago
read header error
Closed
3 years ago
Comments count
4
-bash: ./straw: Permission denied
Closed
3 years ago
Comments count
2
Potential bug in straw python version
Closed
3 years ago
the error of test data
Closed
3 years ago
Comments count
3
Straw update to v9
Closed
3 years ago
Comments count
1
Update read hic header to handle v9
Closed
4 years ago
Issue loading .hic file from 4DN Data Portal
Closed
4 years ago
Comments count
5
python strawC should report data in a more usable format
Updated
4 years ago
Comments count
1
Can you update pip to reflect the current version 0.08 ?
Updated
4 years ago
Comments count
3
chr_chr map ERROR
Updated
4 years ago
Comments count
3
segmentation fault
Closed
4 years ago
Comments count
3
error when calling straw.straw python api
Updated
5 years ago
Comments count
4
Small test data
Closed
5 years ago
Comments count
1
Silent failures in straw/straw.py
Updated
5 years ago
Comments count
2
how is the output from straw formatted?
Closed
5 years ago
Comments count
7
straw.py's readMatrix fails silently
Closed
5 years ago
Reasonable error messages and exit when no normalization vectors
Updated
5 years ago
EOF met with straw.cpp + aidenlab/Juicebox/blob/master/data/inter.hic
Closed
5 years ago
Comments count
2
straw.py contains a typo that breaks code
Closed
5 years ago
Comments count
1
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