ahmohamed / lipidr

Data Mining and Analysis of Lipidomics datasets in R

https://www.lipidr.org/

ahmohamed/lipidr Issues

Add support for multilevel/mixed effects models
Updated 8 months ago
Names do not follow recommended pattern
Updated a year ago
Suggestion for Unsaturation analysis and chain length
Updated a year ago
Maybe consider switching the colors in the plot_chain_distribution function?
Updated a year ago
Error in .check_sample_annotation(data, annot)
Updated a year ago1
annotate_lipids error
Updated a year ago1
Volcano plot log2FoldChange
Updated a year ago1
Finding the current version of lipidr + lipid names issue
Closed a year ago
Normalization - Log transformation
Updated a year ago2
Show labels on plot_mva
Closed 2 years ago1
names not following the pattern 'CLS xx:x/yy:y
Closed 2 years ago4
lipidR error when loading package
Closed 2 years ago1
Problem when loading the lipidr library
Closed 2 years ago2
add_sample_annotation
Closed 2 years ago2
Is normalization necessary for differential analysis?
Updated 2 years ago
a question about lipid name
Closed 2 years ago4
Error when running
Closed 2 years ago1
could not find function "plot_enrichment"
Closed 2 years ago1
Incorporating the multi-level experiments from Limma into Lipidr
Closed 2 years ago9
error in running the Vignette example
Closed 2 years ago9
Two factor analysis with interaction
Closed 2 years ago3
What kind of numeric measurements does as_lipidomics_experiment expect/assumes?
Closed 2 years ago7
Normalized?
Closed 2 years ago1
de_analysis, group_col names
Closed 2 years ago3
PCA loading plot
Closed 2 years ago4
Volcano plot eBayes f or t statistic
Closed 2 years ago2
Issue with "as_lipidomics_experiment" function
Closed 2 years ago4
lipid name parsing for class(O+P-chain)
Closed 2 years ago2
plot_molecules in vignette: colors for molecule and class do not match
Closed 2 years ago1
LogFC calculations
Closed 2 years ago2
Batch effect
Closed 2 years ago1
no TG nor DG in list
Closed 2 years ago1
296 non-parsed molecules
Closed 3 years ago5
Issues Plotting
Closed 2 years ago1
Add annotation with numeric scores
Closed 2 years ago1
argument "uq_expr" is missing
Closed 2 years ago2
cannot be installed in MacOS RStudio
Closed 2 years ago1
Lipidr query
Closed 3 years ago3
Lipid Name Parsing for UCLA Core Mass Spec XLSX Report
Closed 3 years ago3
Error in add_sample_annotation
Closed 3 years ago4
Question on the calculation of p values in volcano plots
Closed 3 years ago1
Dealing with multiple molecules with the same total chain length and unsaturation
Closed 3 years ago3
Showing plot_chain_distribution(data) for multiple groups at the same time
Closed 4 years ago2
lsea issue
Closed 4 years ago3
How to extract the area matrix?
Closed 4 years ago2
Showing only a subset of lipid classes in the full dataset
Closed 4 years ago2
Can't make a lipiomics experiment due to lipid names
Closed 4 years ago4
could not find function "plot_enrichment"
Closed 4 years ago2
mva function issue
Closed 4 years ago3
What is ACar?
Closed 4 years ago1