Giters
ahellander
/
pyurdme
Python API for URDME solvers
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Stargazers:
4
Watchers:
5
Issues:
71
Forks:
12
ahellander/pyurdme Issues
export_to_vtk fails with Dolfin 2017.1.0
Updated
7 years ago
Comments count
1
Compilation of core solver fails on Ubuntu 16.04
Updated
7 years ago
'Cell' object has no attribute 'diameter'
Updated
7 years ago
export_to_xyz misnamed
Updated
8 years ago
Misleading UnboundLocalError exception
Updated
8 years ago
xmdf files generated by pyurdme examples faulty
Updated
8 years ago
Comments count
2
mshr missing from fenics ppa for ubuntu-xenial (16.04)
Closed
7 years ago
Comments count
4
genereate_*_mesh broken with FeniCS > 1.4
Closed
9 years ago
Comments count
2
Incompatibilities with FEniCS 1.6
Closed
9 years ago
Comments count
1
display_particles does not work with species names with length > 1
Closed
8 years ago
Visualization is broken in develop with FeniCS 1.5
Closed
9 years ago
Three.JS rendering can have incorrect aspect ratio
Closed
8 years ago
Comments count
2
Enable subdomain highlighting in mesh display
Updated
9 years ago
Update models to use mshr module
Closed
9 years ago
Comments count
1
All models should be updated to new style subdomains
Updated
10 years ago
subdomain specification is too complex
Closed
10 years ago
Volume rendering
Closed
10 years ago
Comments count
1
sparse output
Closed
10 years ago
Comments count
2
Fixes for Dolfin 1.4.0
Closed
10 years ago
Comments count
1
Species names cannot contain '+,-,*'
Updated
10 years ago
result.display() takes a long time
Updated
9 years ago
Comments count
1
solver.run gives wrong result for many trajectories
Closed
10 years ago
Comments count
1
Be able to use datafunctions in parameter expressions
Updated
10 years ago
Complete README.md with instructions
Closed
8 years ago
Test installer
Updated
10 years ago
Get rid of annoying Dolfin warning
Closed
9 years ago
Comments count
2
Run pylint on the code, fix all errors
Closed
7 years ago
URDMEModel function to set initial conditions need more explicit names
Closed
10 years ago
Comments count
1
Rename all functions to lowercase_with_underscores
Closed
10 years ago
Comments count
3
HDF5 functions in NSM core needs to be refactored into a library
Closed
10 years ago
Comments count
2
Core solver fails on Ubuntu 14.04
Closed
10 years ago
Comments count
1
pyurdme should run without ipython installed
Closed
10 years ago
reorderDofToVoxel introduces a huge performace hit
Closed
10 years ago
Comments count
1
mincde broken
Closed
10 years ago
simple_diffusion2 broken
Closed
10 years ago
Comments count
5
Rename URDMEDataFunction?
Closed
10 years ago
Comments count
3
mincde example should use URDMEDataFunction
Closed
10 years ago
timespan should belong to the solver object
Updated
10 years ago
Comments count
4
Function to start a simulation from data in a result file.
Closed
10 years ago
Comments count
3
Custom propensities must specify their own volume dependency
Closed
10 years ago
Comments count
1
Dependency graph for models with custom propensities
Updated
10 years ago
Comments count
3
cylinder_demo broken
Closed
10 years ago
Comments count
1
Fix all warnings about "dof_to_vertex_map"
Closed
10 years ago
Comments count
1
Initial Conditions tied to URDMEModel object
Updated
10 years ago
Comments count
1
Need documentation on API
Closed
10 years ago
Comments count
1
Orbit controls in three.js output not working
Closed
10 years ago
Comments count
2
Should provide an alternate route to accessing output data that does not load it in memory
Closed
10 years ago
Output file should not be deleted upon accessing U for the first time
Closed
10 years ago
Results are not transferred in parallel settings
Closed
10 years ago
Add attributes to the output hdf5 files.
Updated
10 years ago
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