ahcarpenter / mapsplice

provides accurate mapping of RNA-seq reads for splice junction discovery -- I'm responsible for the non-CLI interface (including all non-stock icons)

MapSplice

MapSplice is an algorithm for mapping RNA-seq data to reference genome for splice junction discovery.

Screenshots

Features

1. generalization to both short-reads and long reads.

2. both CPU and memory efficient.

3. discovery of both canonical, semi-canonical and non-canonical junctions.

4. splice inference based on the alignment quality and diversity of reads mapped to a junction.

5. identification of chimeric events (intra-chromosomes and inter-chromosomes, inter-strands) with long reads

For more information, please see http://www.netlab.uky.edu/p/bioinfo/MapSplice