agniRS / spatial-RNA-seq

spatial RNA-seq analysis in Glioblastoma using Python

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Spatial RNA-seq Analysis in Glioblastoma using Python

Here is a simple jupyter notebook scriptto find out how to idemtify spacially expressive genes in glioblastoma data.

The dataset is freely available from 10X Genomics.

Packages used : scanpy (for pre-processing) , leidenalg (for clustering), SpatialDE (for identification of spatially varied genes).

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spatial RNA-seq analysis in Glioblastoma using Python


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