aghozlane

Amine Ghozlane's repositories

shaman

SHAMAN is a SHiny application for Metagenomic ANalysis including a bioinformatic workflow, the statistical analysis and multiple visualization.

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masque

Metagenomic AnalySis with QUantitative pipEline

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pcm

A 3D-based method to annotate resistance genes

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agc-tp

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bioconda-recipes

Conda recipes for the bioconda channel.

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biomformatshaman

Biom file format support in R/Bioconductor, vers. 1.x (JSON) and 2.x (HDF5)

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chamelon

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check_plagiarism

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d3heatmap

A D3.js-based heatmap htmlwidget for R

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d3vennR

R htmlwidget for d3.js venn diagrams from Ben Frederickson (@benfred)

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debruijn-tp

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DESeq2shaman

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docker_shaman

Script to create a shaman docker

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docker_shaman_dev

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geneprediction-tp

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get_sequence_length

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gisaid-curation

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github-actions-for-packages

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grab_sequence

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KronaR

add Krona to Shiny

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KronaRShy

wrapper shyny app to Krona

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PhyloTreeMetaR

Phylocanvas to R

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rAmCharts

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rnafusion

RNA-seq analysis pipeline for detection gene-fusions

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rNVD3shaman

Interactive Charts from R using NVD3.js

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shaman_bioblend

Shaman bioblend communicate with galaxy to send data from SHAMAN

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shinydashboardshaman

Shiny Dashboarding framework

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spyne

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taxadb

:hatching_chick: locally query the ncbi taxonomy

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treeWeightD3

display a weight tree with D3 in R

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