aghaeifar

shimming-toolbox

Code for performing static, dynamic and real-time shimming using external and internal MRI shim coils

eigen-cuda

MWE for using the Eigen library in CUDA kernels

cuda-samples

Samples for CUDA Developers which demonstrates features in CUDA Toolkit

mexIPOPT

MATLAB interface for IPOPT

AM_multiband

Simple optimization to compute slice phase offsets for multi-band RF pulses

Multiband-RF

Code to design Multiband RF pulses

sar4seq

To compute Specific Absorption Rate for MRI pulse sequences

opensource-mri-project

skullStrip

fsl_bet2

fsl_bet2

BEaST

C implementation of Brain Extraction based on nonlocal Segmentation Technique

QuadProgpp

A C++ library for Quadratic Programming which implements the Goldfarb-Idnani active-set dual method.

shimming-toolbox-matlab

Code for performing real-time shimming using external MRI shim coils

MP2RAGE-related-scripts

MP2RAGE Scripts - T1 map correction & Background noise removal

MRiLab

A Numerical Magnetic Resonance Imaging (MRI) Simulation Platform

twixtools

python file reader/writer for Siemens MRI raw data + compression utility

ROMEO

Executables for ROMEO unwrapping for Linux, Windows and Mac OSX

portable-MRI

reconstruction and processing code for portable MRI data

sigpy

Python package for signal processing, with emphasis on iterative methods

siemens_to_ismrmrd

Siemens ISMRMRD converter

deltaB0_CalcTool

Algorithms for calculating field distortions in MRI for a given susceptibility distribution, as described in Boegle et al. (2010), Magn. Reson. Mater. Physics, Biol. Med. 23, 263–273. doi:10.1007/s10334-010-0225-8

dicm2nii

DICOM to NIfTI conversion, NIfTI tools

levelsets

Level Set Methods for image segmentation